**Citing OmicShare Tools:**

If you use OmicShare Tools, we hope you cite it in the paper, for example: XXXX analysis was performed using the OmicShare tools, a free online platform for data analysis (http://www.omicshare.com/tools).

- category：
- All Tools
- table tools
- Interactoin analysis
- functional analysis
- basic graph visualization
- cluster analysis
- data mining
- sequence tools
- annotaion tools
- My Collection

### Letter identification column chart

Multiple comparisons were used to analyze differences between groups, and the degree of difference was indicated by letters.

5

*7*

### paired differential expression analysis

Find out differential expression genes via edgeR based on paired relationship

10

*7*

### paired t test

This tool is used to estimate whether two groups have significant difference via t-test based on paired relationship.

5

*5*

### box_mul_sig

T-test and rank sum test were performed between multiple groups of samples, and a box plot was drawn. Significant differences between groups marked wi

5

*20*

### box_two_sig

T test and rank sum test were performed between the two groups of samples, and a box plot was drawn. Significant differences were marked between the

5

*13*

### tSNE

Reduce multiple samples to two-dimensional plane via the nonlinear reduction model. Not available for sing-cell data for the moment.

5

*11*

### Significance marker difference analysis（Multiple g

T-test and rank sum test were performed between multiple groups of samples, and significant differences between groups marked with significant differe

5

*19*

### Significance marker difference analysis（Two groups

T test and rank sum test were performed between the two groups of samples, and significant differences were marked between the groups.

5

*10*

### plantTFdb_annotation

align nucleic acid or protein sequence to plantTFdb to predicte TF families

1200

*14*

### AnimalTFDB annotation

align nucleic acid or protein sequences to animalTFBD to predicte TF families

1200

*3*

### Swiss-Prot annotation

align the query sequences to the Swiss-Prot protein database to obtain functional annotations

1800

*11*

### Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

30

*196*

### rank_sum_test

this tool determine if two groups of data are significantly different from each other

5

*24*

### GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

30

*232*

### roc

ROC curve, is a graphical plot that illustrates the diagnostic ability of a binary classifier system(e.g. biomarker)

5

*55*

### Differential metabolites analysis

Differential metabolites analysis tool is used to screen out differential metabolites between two groups of samples.

5

*194*

### OSGO

Plotting GO (gene ontology) annotations (the second level) in three GO ontologies from one or more groups of data.

5

*203*

### Decoding SAM flag

Identify the properties of a read based on its SAM flag value or obtain a SAM flag value based on the reads properties.

0

*33*

### Linear Regression plot

Plotting the relationship between a scalar dependent variable y and one explanatory variable x.

2

*100*

### Differential Expression Analysis

Find out differentially expressed genes between two groups of data.

10

*329*

### Three-dimension PCA

Convert linearly massive variables into several important variables and draw a three-dimension score plot.

5

*178*

### Senior Scatter Plot

Demonstrate file data in a scatter plot with auxiliary lines and correlation coefficient.

5

*128*

### GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

15

*738*

### Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

15

*748*

### Frequency Histogram

Demonstrate the frequency distribution of file data in a frequency histogram.

2

*81*

### Two-dimension PCA

Convert linearly massive variables into several important variables and draw a two-dimension score plot.

10

*453*

### BLAST-Two Sequences Alignment

Local alignment between two sequences to measure their similarity

5

*104*

### CDS2protein

Translating CDS to protein according to the Standard Code (transl_table=1) or the Bacterial, Archaeal and Plant Plastid Code (transl_table=11)

2

*62*

### Multiple tables merging

Merging more than two tables according to the merging type and default value.

2

*140*